Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKISKFVFLFLFCLGFNLQASGTLNIEEVITRKGFKFLFVENCDL--PKVSLNISFKDAGYAYENVEKQGLTWFTSLAIQEGAGKNDAKDFAKKLEDKGIS-----LNFIAGLEAFRASLNTLS---ENLEEAVSLLSDAIMHPKVDLEGLNRAFEKAKVNFNNLEKDPYFIAGKELNTLLFKKHPYSKSEYGILDTIMSITRDDVLAYVKRNFTKDNIVISVVGCTTKEEVSALLDKYLSKLPLKRSKVRKIPV-KNNFGPAESKNIFMDIPQSVIFFAQKGIAYEDPDYY------SASVLINALGGMGLNSILMKELRQ--NLGITYGVFAHIIPNKHGNAIVGNMSTDSSTAGKAILAVKDTLSRIKREGIDEQLFKDAKTILVNNLTFF-----LSNNTNTAMLLDDMQIND---RDVNRINNYAD-IINDVKLEKVNELASSLLDPENLFFVKVGRNT |
| 3GO9 Chain:A ((21-447)) | --------------------QPDPAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVN-TGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLW-QQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWWR---YRLKGSSLIGHDP--GQPVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEPV-SLMNEQAAQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALFW-----HIKQVLEKNNQKNLKLGFDCRVQY--QRAQCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQD-TTLVLMQPKG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GO9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107002 for 3052 contacts (-35.1/contact) +
2D Compatibility (PS) -43796 + (NN) -21519 + (LL) 2264
1D Compatibility (HY) -1600 + (ID) 2550
Total energy: -174203.0 ( -57.08 by residue)
QMean score : 0.421
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