Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLEKIQSDVEDIWKNRSKLSNRSVKRAARVIIKKVIKLLDSGKIRVAERLSDGKWIVHTWIKQAISLYFLTEESKMIDHTGWWFDKVNNKFDGWNEEEFHQSKIRAVPGCFVRQSAYVGTNVVLMPSFINVGAYISSGTMIDTWSTIGSCAQIGKNCHVSGGVGIGGVLEPIQASPVIIEDNCFIGARSEVAEGVIIREGSVLGMGVFIGASTKIIDRETNKVFYGEVPPYSVVVPGSTLS---A---NNISIYCAIIVKKVDEKTRQKTSINEILRD
3EG4 Chain:A ((101-284))
-----------------------------------------------------------------------------------------------TANEFEKAGFRAVPNCIVRHSAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGKSTKIVDRATGEVFYGEVPPYSVVVAGTMPGKNVPGENWGPSLYCAVIVKRADEKTRSKTSINELLRD
General information:
TITO was launched using:
RESULT:
Template:
3EG4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188952 for 1418 contacts (-133.3/contact) +
2D Compatibility (PS) -19822 + (NN) -9464 + (LL) 7824
1D Compatibility (HY) -23200 + (ID) 6300
Total energy: -239914.0 ( -169.19 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_3EG4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EG4-query.scw
PDB file :
Tito_Scwrl_3EG4.pdb
: