Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLEALKRVGTDFVLK-TKDLFTPS-----ESQVYVKDLRKVMIYKDGRKCRYPKNYDQVVESGKVIENKDMHGNSVLDKDRNPTYRLLYGNKNKDGWPIFELTKIMEIGDKSYFTIKFLVDKGKVSKGKCDNNDYHSFYKPFGFLKIDLEKYLPVFEAQKTKKSTCSFEFTNSSVPTKKTKNKKSNEVKEIVDEKERNGEL-LYTSDYKKLSTSFFEIRDQSNNLELGKSIISVPIVFAAGLAKICAKLLTYIPMELGEYLIGKQSLIAKFFGYFFLFTPAVAV-----KNSVNMLATLLKLPICAFVANKEEYGDAYWTMWKYQLKECWQEAKNDYSVIKDGKRSELKKKDYPKREVAGTWKELDAKRSIIEEELEGRLSKGDENMTDSGKQEKDLEQDTTQPRTLIQRKIDYVSKLNEERDQDKCVSQIHN |
| 4OCV Chain:A ((24-378)) | TNEALFDVASHFALEGTVDSIEPYGDGHINTTYLVTTDGPRYILQRMNTGIFPDTVNLMRNVELVTSTLKAQGKETLD---------IVRTTSGDTW--------AEIDGGAWRVYKFI--EHTMSYNLVPN---PDVFREAGRAFGDFQNFLSGFDANQLTETIAHFH----DTPHRFEDFKKALAADELGRAAGCGPEIEFYLSHADQYAVVMDGLRDGSIPLRVTHNDTKLNNILMD---ATTGKARAIIDLDT----IMPGSMLFDF-GDSIRFGASTALEDERDLDKVHFSTELFRAYTEGFVGEL---------------------------------RDSITAREAELLPFSGNLLTMECGMRFLADYLEG----------DVYFATKYPEHNLVRSRTQIKLVREMEQRADETRAIVADVMETT- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 49639 for 2823 contacts (17.6/contact) +
2D Compatibility (PS) -35360 + (NN) 906 + (LL) 4268
1D Compatibility (HY) -9200 + (ID) 3350
Total energy: 6903.0 ( 2.45 by residue)
QMean score : 0.222
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