Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYTGSLYLSLISLLQNHT-FQPEEKVCLFSYGSGAVGEIFSGSIVKGYDKALDKEKHLNMLESREQLSVEEYETFFNRFDNQEFDFERELTQDPYSKVYLYSIEDHIRTYKIEK
1YSL Chain:B ((295-401))
LYTGSLYLGLISLLENATTLTAGNQIGLFSYGSGAVAEFFTGELVAGYQNHLQKETHLALLDNRTELSIAEYEAMF----AETLDTDIDQTLEDELKYSISAINNTVRSYR---
General information:
TITO was launched using:
RESULT:
Template:
1YSL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20505 for 499 contacts (-41.1/contact) +
2D Compatibility (PS) -11178 + (NN) -3974 + (LL) 448
1D Compatibility (HY) -11600 + (ID) 2400
Total energy: -49209.0 ( -98.62 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_1YSL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YSL-query.scw
PDB file :
Tito_Scwrl_1YSL.pdb
: