Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MDIVNIVIMLLIGVFGGFISGLVGVGGAIIIYPAILLLPPLFGAPAYSAYIASGLTSSQVFFSTLSGSLKARKKTEFSPQLVLYMGGGMIIGSMLGAFLANLFDATFVNTVYIIIALLALTLMFIKVKPSSEKSSFNKYLLVIIGLFIGIISGIVGAGGA-FIIIPILLVLFKLPMNTVVANSIVIA--FISSIGAFVIKL-----IQGYIPLYDALF----LIIGSIIFAPIGLKLSKKVPNIIQKWIISILIVFAIVQLIL
1KC6 Chain:A ((1-257))
SFIKPIYQDINSILIG--QKVKRPAAGEPFEKLVYKFLKENLSDLTFKQYEYLNDLFMKNPAII------GHEARYKLFNSPTLLFLLSRGKAATENWS--IENLFEEKQNDTADILLVK-DQFYELLDVKTRNISKSAQAPNIISAYKLAQTCAKMIDNKEFDLFDINYLEVDWELNGEDLVCVSTSFAELFKSEPSELYINWAAAMQIQFHVRDLDQGFNGTREEWAKSYLKHFVTQAEQRAISMIDKF------VKPFKKYIL
General information:
TITO was launched using:
RESULT:
Template:
1KC6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -239610 for 1608 contacts (-149.0/contact) +
2D Compatibility (PS) -24012 + (NN) 7020 + (LL) 1872
1D Compatibility (HY) -6800 + (ID) 2050
Total energy: -263580.0 ( -163.92 by residue)
QMean score : 0.113
(partial model without unconserved sides chains):
PDB file :
Tito_1KC6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KC6-query.scw
PDB file :
Tito_Scwrl_1KC6.pdb
: