Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKENTTTTLFVYEKPKSTISEKFRGIRSNIMFSKANGEVKRLLVTSEKPGAGKSTVVSNVAITYAQAGYKTLVIDGDMCKPTQNYIFNEQ-NNNGLSSLIIGRTTMSEAITSTEIENLDLLTAGPVPPNPSELIGSERFKELVDLFNKRYDIIIVDTPPVNTVTDAQLYARAIKDSLLVIDSEKNDKNEVKKAKALMEKAGSNILGVILNKTKVDKSSSYYHYYGDE
1HYQ Chain:A ((2-176))
----------------------------------------VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYV-GPGGVKVVPAGVSLEGLR-KANPEKLEDVLTQIMESTDILLLDAPAGLER-SAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLG-----------
General information:
TITO was launched using:
RESULT:
Template:
1HYQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54561 for 1462 contacts (-37.3/contact) +
2D Compatibility (PS) -19056 + (NN) -10490 + (LL) 2816
1D Compatibility (HY) -8400 + (ID) 2050
Total energy: -91741.0 ( -62.75 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_1HYQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HYQ-query.scw
PDB file :
Tito_Scwrl_1HYQ.pdb
: