Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVG-FDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNLS
4DAI Chain:A ((39-291))
--KTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIG-----------SVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVL--DLPVEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAM-----------
General information:
TITO was launched using:
RESULT:
Template:
4DAI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126895 for 2070 contacts (-61.3/contact) +
2D Compatibility (PS) -26730 + (NN) -19379 + (LL) 1028
1D Compatibility (HY) -20000 + (ID) 5450
Total energy: -197426.0 ( -95.37 by residue)
QMean score : 0.681
(partial model without unconserved sides chains):
PDB file :
Tito_4DAI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DAI-query.scw
PDB file :
Tito_Scwrl_4DAI.pdb
: