Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLT--ACYLLVNKAIRRG-----YKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKLSSDALHQAFN
3EBK Chain:A ((7-176))
-NEDCFRHESLVPNLDYERFRGSWIIAAGTSEALTQYKCWIDRFSYDDALVSKYTDSQGKNRTTIRGRTKFEGN---KFTIDYNDKGKAFSAPYSVLATDYENYAIVEGCPAAANGHVIYVQLRMTLRRFHPKMLQHYTLDQVNQNKKAIEEDLKH------FNLKYEDLHSTCH
General information:
TITO was launched using:
RESULT:
Template:
3EBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17793 for 1199 contacts (-14.8/contact) +
2D Compatibility (PS) -16357 + (NN) 1673 + (LL) 548
1D Compatibility (HY) -1600 + (ID) 1300
Total energy: -34829.0 ( -29.05 by residue)
QMean score : 0.066
(partial model without unconserved sides chains):
PDB file :
Tito_3EBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EBK-query.scw
PDB file :
Tito_Scwrl_3EBK.pdb
: