Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTEIDFDIAIIGAGPAGMTAAVYASRANLKTV----MIERGIP-GGQMANTEEVENFPGF-EMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGE----YKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA-FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGK-VGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVT-KDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA |
| 3ITJ Chain:C ((19-337)) | -SHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAV-FRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRAST---KRAEKNEKIEILY-NTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLTSL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ITJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134060 for 2602 contacts (-51.5/contact) +
2D Compatibility (PS) -31569 + (NN) -5249 + (LL) 920
1D Compatibility (HY) -20000 + (ID) 6400
Total energy: -196358.0 ( -75.46 by residue)
QMean score : 0.418
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