Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLHFAILFWLALIFLVAATFILVLMKKTGKESKKESYLSFTVILYIFGFAILIYTFIFGVL
1VF5 Chain:F ((1-33))
----------------------------MTEEMLYAALLSFGLIFVGWGLGVLLLKIQGAE-
General information:
TITO was launched using:
RESULT:
Template:
1VF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6977 for 131 contacts (-53.3/contact) +
2D Compatibility (PS) -3270 + (NN) 364 + (LL) 4276
1D Compatibility (HY) -4000 + (ID) 350
Total energy: -9957.0 ( -76.01 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_1VF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VF5-query.scw
PDB file :
Tito_Scwrl_1VF5.pdb
: