Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGT---MS----------------------IDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
2GAI Chain:A ((7-142))
-----KYIVVESPAKAKTIKSILGNEYEVFASMGHIIDLPKSKFGVDLEKDFEPEFAVIKGKEKVVEKLKDLAKKGELLIASDMDREGEAIAWHIARVTNTL----GRKNRIVFSEITPRVIREAVKNPRE----------------------
General information:
TITO was launched using:
RESULT:
Template:
2GAI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53315 for 673 contacts (-79.2/contact) +
2D Compatibility (PS) -11027 + (NN) -5886 + (LL) 2544
1D Compatibility (HY) -5200 + (ID) 650
Total energy: -73534.0 ( -109.26 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_2GAI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GAI-query.scw
PDB file :
Tito_Scwrl_2GAI.pdb
: