Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLFIPYIMG-NKD---LIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQ-IKCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIESIKAIANVPVVAGFGIRTPQHVADIK-EVADGIVIGSEIVKRFKSNT------REEIIRYLQSIQQTLNN
3VND Chain:A ((17-267))
-KGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVT--------PIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVKIIEAHQHDEATLLAKLAEFTTAMKAAT--
General information:
TITO was launched using:
RESULT:
Template:
3VND.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -177490 for 2012 contacts (-88.2/contact) +
2D Compatibility (PS) -25141 + (NN) -10061 + (LL) -76
1D Compatibility (HY) -9600 + (ID) 3000
Total energy: -225368.0 ( -112.01 by residue)
QMean score : 0.691
(partial model without unconserved sides chains):
PDB file :
Tito_3VND.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VND-query.scw
PDB file :
Tito_Scwrl_3VND.pdb
: