Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKKSVRHIKIREIISNEQIETQDELVKRLNDYDLNVTQATVSRDIKELQLIKV-PIPSGQYVYSLPNDRK-FHPLEKLGRYLMDSFVNIDGTDNLLVLKTLPGNAQSIGAILDQINWEEVLGTICGDDTCLIICRSKEASDEIKSRIFNLL
3LAJ Chain:C ((18-169))
---RAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPE---VSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENL-
General information:
TITO was launched using:
RESULT:
Template:
3LAJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80748 for 1021 contacts (-79.1/contact) +
2D Compatibility (PS) -15546 + (NN) -5721 + (LL) 396
1D Compatibility (HY) -7600 + (ID) 2400
Total energy: -111619.0 ( -109.32 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_3LAJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LAJ-query.scw
PDB file :
Tito_Scwrl_3LAJ.pdb
: