Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYE--QIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHFNKIYFLRISTL-PLS-L-GQESCVIRIVPQFFQQQ------K-STY----------------------KFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLNVISIEDPVEMQIPGI-------VQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHL-VLTTLHATDCKGAILRLLEMGIS------------VQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTMDKYI |
| 2GZA Chain:A ((26-345)) | ----LEPLRPWLDDPQITEVCVNRPG---EVFCERASAWEYYAVPNLDYEHLISLGTATARFVDQDISDSR-P---VLSAIL--PMGERIQIVRPPACEHGTISVTIRKPSFTRRTLEDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYP--------VTAATLLRSCLRMKPTRILLAELRGGE-AYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQNRQGRQLPYEIIRRLLYLVVDVVVHVHNGVHDGT-GRHISEVWY------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GZA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172108 for 1900 contacts (-90.6/contact) +
2D Compatibility (PS) -27075 + (NN) -7342 + (LL) 4572
1D Compatibility (HY) -5600 + (ID) 2550
Total energy: -210103.0 ( -110.58 by residue)
QMean score : 0.417
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