Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYQPHYFQEV----RKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASLVSAISQGYRPGDFESITVTVDADKP-SSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTVAELLPFGFSGKDLE
1ZAB Chain:C ((9-143))
-AVEPEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISEGYK--DFRAIAISSDLQEEFISPCGACRQVMREF-GTDWAVYMTKPDGTFVVRTVQELLPASFGPEDLQ
General information:
TITO was launched using:
RESULT:
Template:
1ZAB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42233 for 985 contacts (-42.9/contact) +
2D Compatibility (PS) -14417 + (NN) -8702 + (LL) -48
1D Compatibility (HY) -12000 + (ID) 3250
Total energy: -80650.0 ( -81.88 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_1ZAB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZAB-query.scw
PDB file :
Tito_Scwrl_1ZAB.pdb
: