Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFSNFFQNLSTLKIVTSILDLLIVWYVLYLLITVFKGTKAIQLLKGILVIVIGQQISMI--LNLTATSKLFDIVIQWGVLALIVIFQPEIRRALEQLGR-----------------------GSFLKRYTSNTYSKDE-----------EKLIQSVSKAVQYMAKRRIGALIVFEKETGLQDYIETGIAMDSNI--------------------SQELLINVFIPNTPLHDGAM-------IIQGTKIAAAASYLP--LSDSPKISKSLGTRHRAAVGISEVSDAFTVIVSEETGD------------------ISVTFDGKLRRDISNEIF------EELLAEHWFGTRFQKKGVK----------------------- |
| 1YT3 Chain:A ((1-375)) | MNY----QMITTDDALASLCEAVRAFPAIALDTEFVR-TRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHW-KLKPQNNLPELISGWRGELMAEALHNLLQEYPQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YT3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -150997 for 1737 contacts (-86.9/contact) +
2D Compatibility (PS) -27551 + (NN) -555 + (LL) 116
1D Compatibility (HY) -9600 + (ID) 2200
Total energy: -190787.0 ( -109.84 by residue)
QMean score : 0.226
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