Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNDLETLKHIIDSSNRITFFTGAGVSVASGVPDFRSMGGLFDEISKDGLSPEYLLSRDYLEDDPEGFINFCHKRLLFV-DTKPNIVHDWIAKLERNQQSLGVITQNIDGLHSDAGSQHVDELHGTLNRFYCNACHKSY-TKSDVIDRTLKHCDNCGGAIRPDIVLYGEMLDQPTIIRALNKIEHADTLVVLGSSLVVQPAAG--LISHFKGDNLIIINKDRTPYDSDATLVIHDDMVSVVKSLMTE
1M2N Chain:A ((3-216))
-----EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR-----YRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDGLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGVVWAGEMLPPDVLDAAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETP-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1M2N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78579 for 1637 contacts (-48.0/contact) +
2D Compatibility (PS) -22801 + (NN) -10966 + (LL) 2224
1D Compatibility (HY) -12400 + (ID) 4300
Total energy: -126822.0 ( -77.47 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_1M2N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M2N-query.scw
PDB file :
Tito_Scwrl_1M2N.pdb
: