Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKELTMDGKHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKI--NNAQTATYTLTLNDGNKKVVNLKKN-----------DDAKNSIDPSTIKQIQIVVK
1DYQ Chain:A ((122-231))
------------------------------------------EEKKVPINLWLDGKQNTVPLETVKTNKKNVTVQELDLQARRYLQEKYNLYNSDVFDGKVQRGLIVFHTSTEPSVNYDLFGAQGQYSNTLLRIYRDNKTINSENM-HIDIYL-
General information:
TITO was launched using:
RESULT:
Template:
1DYQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37981 for 641 contacts (-59.3/contact) +
2D Compatibility (PS) -10628 + (NN) -2561 + (LL) 2792
1D Compatibility (HY) -4800 + (ID) 850
Total energy: -54028.0 ( -84.29 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_1DYQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DYQ-query.scw
PDB file :
Tito_Scwrl_1DYQ.pdb
: