Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQI--NNKKFQVAVNEEFVQ-KSDFIQPNDTVALIPPVSGG
3RPF Chain:C ((3-74))
VEVRFFGPIKEE------NFFIK-ANDLKELRAILQEKEG-LKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLPPVCGG
General information:
TITO was launched using:
RESULT:
Template:
3RPF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36924 for 408 contacts (-90.5/contact) +
2D Compatibility (PS) -7488 + (NN) -2201 + (LL) 968
1D Compatibility (HY) -6800 + (ID) 800
Total energy: -53245.0 ( -130.50 by residue)
QMean score : 0.697
(partial model without unconserved sides chains):
PDB file :
Tito_3RPF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RPF-query.scw
PDB file :
Tito_Scwrl_3RPF.pdb
: