Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKSINHICFSVRNLNDSIHFYRDILLGKLLLTGKKTAYFELAGLWIALNEEKDIPRNEIHFSYTHIAFTIDDSEFKYWHQRLKDNNVNILEGRVRDIRDRQSIYFTDPDGHKLELHTGTLENRLNYYKEAKPHMTFYK
4JD1 Chain:B ((2-139))
MLQGINHICFSVSNLEKSIEFYQKILQAKLLVKGRKLAYFDLNGLWIALNVEEDIPRNEIKQSYTHMAFTVTNEALDHLKEVLIQNDVNILPGRERDERDQRSLYFTDPDGHKFEFHTGTLQNRLEYYKEDKKHMTFY-
General information:
TITO was launched using:
RESULT:
Template:
4JD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55102 for 873 contacts (-63.1/contact) +
2D Compatibility (PS) -14568 + (NN) -283 + (LL) 64
1D Compatibility (HY) -16800 + (ID) 4500
Total energy: -91189.0 ( -104.45 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_4JD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JD1-query.scw
PDB file :
Tito_Scwrl_4JD1.pdb
: