Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYQKQRNTAETQLNISIS-DDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQRVPSSKGVIE
4QNK Chain:B ((8-189))
-IGEVKRETKETNVSVKINLDGHGVSDSSTGIPFLDHMLDQLASHGLFDVHVRATGDTHIDDHHTNEDVALAIGTALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQA-TESDPRR---------
General information:
TITO was launched using:
RESULT:
Template:
4QNK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139878 for 1531 contacts (-91.4/contact) +
2D Compatibility (PS) -19112 + (NN) -6989 + (LL) 772
1D Compatibility (HY) -12000 + (ID) 3850
Total energy: -181057.0 ( -118.26 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_4QNK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QNK-query.scw
PDB file :
Tito_Scwrl_4QNK.pdb
: