Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIFVLLMSVILGISLTGCIGYRMDLEHFNTLYYEESPKKAYEYSKQFTKKK-KN---ALLWDLQNGLSALYARDYKTSLGVLDQAEQRFDKTQSAFTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKAIDYML----LNDSAKARVQFNRANERQRRAKEF---YYE-----------EVQKAIKEIDSSKKHNINMERSRAEVSEILNNTYSNLDKYEAYQGLL---NPAVSYLSGLFYALNGDKNKGLGYLNEAYGI-SQSPFVAQDLVFFKNPNRSHFTWIIIEDGKEPQKSEFKIDVPIFMIDSVYNVSVALPKLEKGEAFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLPYIITRAILSATFKVGMQAVANYYLGFVGGLVTSLYSGVSTFADTRNTSIFAHKIYLMRIKNKAFESYEVRADSIDAFSFSLKPCKRSLESPKIIDARELLSGFVTAPQVFCSNRHNILYVRSFKNGFVLSHLK |
| 2YHC Chain:A ((7-218)) | ------------------------IYATAQQKLQDGNWRQAITQLEAL-DNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---------------------------IDYVMYMRGLTNMALDDDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG---------AWVAVVNRVEG--------MLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHHHHHH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YHC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 11964 for 1193 contacts (10.0/contact) +
2D Compatibility (PS) -18391 + (NN) -8707 + (LL) 20668
1D Compatibility (HY) 4000 + (ID) 700
Total energy: 8834.0 ( 7.40 by residue)
QMean score : 0.457
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