Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKYSAIPTPCYALESERLEKNAKILEIVRQQSGAKVLLALKGYAFWREFGILRQKLNGCCASGLYEAKLAFEEFGGRESHKEICVYSPAFKEAEMSAILPLAT-SIIFNSFHQYATYKDRILDKNKQLENLGLSPIKMGLRINPLYSEVTPAIYNPCSKMSRLGITPSGFEKGVKE---HGLEGVSGLHFHTHCEQN-ADALCRTLEHVERHFKPY---LENMAWVNFGGGHHITRSD--YDVNLLIQTIKDFKERYHNTEVILEPGEAIGWQCGFLIASVIDIVQ-NDQEIAILDASFSAHMPDCLEMP-Y--RPSILKVSVENDEEIIEVEKGENQGAFSYFLGGPTCLAGDFMGS-FSFETPLKRGDKIVFQDMLHYTIVKNNSFNGVPLPSLAKIDSQGFKILKS-FSYEDYKNRN |
| 3VAB Chain:A ((44-435)) | ---AKAVGTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQAVLTALAKLGAGADTVSQGEIRRALAA--GI-PANRIVFSGVGKTPREMDFALEAGIYCFNVESEPELEILSARAVA--------AGKVAPVSLRINPDVDAKTHAKI---KSENKFGIPRDKARAAYARAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYRTPPPPPVAYAQIVAKHIKPL-GLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIVDAAMNDLIRPTLYDAFHDIRPVIMPN--------------DNAPRIRADFVGPVCETGDYLGLDREVA-KPAPGDLIAICTTGAYGAVLSSTYNSRLLIPEVLGDGERYHVVRPRRTYEELLALD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VAB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -200256 for 3080 contacts (-65.0/contact) +
2D Compatibility (PS) -38948 + (NN) -10116 + (LL) 1896
1D Compatibility (HY) -8400 + (ID) 3600
Total energy: -259424.0 ( -84.23 by residue)
QMean score : 0.428
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