Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------MKEKPFNSEQMAFLEELLSHQEKHLESKLSGFSVNDL--DMQSVFRLERNRLKIAY--RLLGLMS----FIALVLAIVLISILPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNR--------ESINRIDDKSRYELVRLQ------SSSKVWQRF---EDLIKAQNSIYVQSHLEREVHIVN-----IAIYQQDNNPIASVSIA----------AKLLNENKLVYEKRYKIV-------LSYLFDTPDFDYASMPKNPTGFKITRYSITEIAPTNRND |
| 4RKS Chain:A ((21-337)) | TYRSIGSTAYPTIGVVLLGGIANPVTRTPLHTSAGIAYSDSCGSIRSETRIYADEATHIYFNGTESTDDNRSVRRVLDRYSSVFEEAFGTKTVSYSSQNFGILSGSSDAGAASIGAAILGLKP-DLDPHDVENDL-------------RAVS--ESAGRSLFGGLTITWSDGFHAYTEKILDPEAFSGYSIVAFAFDYQRNPSDVIHQNIVRSDLYPARKKHADEHAHMIKEYAKTNDIKGIFDLAQEDTEEYHSILRGVGVNVIRENMQKLISYLKLIRKDYWNAYIVTGGSNVYVAVESENADRLFSIENTFGSKKKMLRIVGGAWHRRPE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RKS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -88476 for 1533 contacts (-57.7/contact) +
2D Compatibility (PS) -24447 + (NN) -7292 + (LL) 1072
1D Compatibility (HY) -2800 + (ID) 2350
Total energy: -124293.0 ( -81.08 by residue)
QMean score : 0.189
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