Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQNLLIQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKNGDIAYSDKVVGMDFMEFLKQRLVLLKELLSEQGSIYVHTDYKIGHYVKVMLDEIFGIQNFRNEITRIKCNPKNFKRIGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTTVPIHAPGEVESGECSKAFKGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQDIWEFKDPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNSDLAIQACKNKLETIT---KDLFVSQNFYDFLVF
3GDH Chain:A ((78-139))-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASF


General information:
TITO was launched using:
RESULT:

Template: 3GDH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22072 for 410 contacts (-53.8/contact) +
2D Compatibility (PS) -6307 + (NN) -1135 + (LL) 16732
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -17632.0 ( -43.00 by residue)
QMean score : 0.554

(partial model without unconserved sides chains):
PDB file : Tito_3GDH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3GDH-query.scw
PDB file : Tito_Scwrl_3GDH.pdb: