Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFKVVQICGG-------LGNQMFQYAFAKSLQKHSNTPVLLDITSFDGSNRKMQLELFPIDLPYASAKEIAIAKMQHLPKLVRDALKYMGFDRVSQEIVFEYEPKLLKPSRLTYFYGYFQ--DPRYFDAISSLIKQTFTLPPPPENGNNKKKEEEYHRKLSLILA---------AKNSVFAHIRRGDYVGIGCQLGI------DYQKKAVEYMAKRVPNMELFVFCED----------LKFTQNLDLGYPFMDMTTRDKDEEAYWDMLLMQSCKHGIIANSTYSWWAAYLINNPGKIII----GPKHWLFGHENILCKEWVKIESHFEVKSQKYNA- |
| 2YPD Chain:A ((1-342)) | -MIPHSWICEKHILWLKDYKNSSNWKLFKECWKQ--GQPAVVSGVHKKMNISLWKAESISLDFGDHQADLLNCKDSIISNANVKEFWD--GFEEVSK-----RETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPEGKFN-LASHLPGFFVRGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNGILSKAGILKKFEEEDLDDILRKRLKDSSEIPGALWHIYAGKDVDKIREFLQKISKEQGHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQEL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YPD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -78048 for 2156 contacts (-36.2/contact) +
2D Compatibility (PS) -30515 + (NN) -3818 + (LL) 1088
1D Compatibility (HY) -2000 + (ID) 2400
Total energy: -115693.0 ( -53.66 by residue)
QMean score : 0.145
|
|
|