Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIIPARLKSSRFENKMLEDIFGLPMVVRCAKNANLVDECVVACDDESIMKACQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKKVILALLEATQNAPFMATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRDFDAKRQTPLLGHIGIYGFHNKEILEELCALKPCVLEDTEKLEQLRALYYQKKILVKIVQSESMGIDTKEDLQNALKIFSPNLLKR
2Y6P Chain:A ((5-225))
-VIIPARLGSTRLKEKPLKNLLGKPLIRWVVEGLVKTGERVILATDSERVKEVVEDLCEVFLTPSDLPSGSDRVLYVVRDLDV---DLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARK-DKEAYERPEDVKVVLDREGYALYFSRSPIPYFRKNDTFYP---LKHVGIYGFR-KETLMEFGAMPPSKLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKLK------
General information:
TITO was launched using:
RESULT:
Template:
2Y6P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100515 for 1746 contacts (-57.6/contact) +
2D Compatibility (PS) -23982 + (NN) -12469 + (LL) 968
1D Compatibility (HY) -13200 + (ID) 4250
Total energy: -153448.0 ( -87.89 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_2Y6P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y6P-query.scw
PDB file :
Tito_Scwrl_2Y6P.pdb
: