Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVGVYGASGRIGKLLLEELKGGYKGLELSSVFVRQKCETDFSSFSHAPLVTNDLKAFVKACECVVDFSLPKGVDHLLDVLLECPKILVSGTTGLEKETLEKMQKLALKAPLLHAHNMSIGIMMLNQLAFLTSLKLKDADIEIVETHHNLKKDAPSGTALSLYETCTKARGYDEKNALITHREGLRSKESIGIATLRGGDVAGKHTIGFYLEGEYIELSHTATNRSIFAKGALEVALWLKDKAAKKYEISEMFG
1VM6 Chain:A ((13-225))
MKYGIVGYSGRMGQEIQKVFSEKG--HELVLKVDVNGV------------------EELDSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVPVVQAYNFSIGINVLKRFLSELVKVLEDWDVEIVETHHRFKKDAPSGTAILLESALGK---------------------SVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAISRTVFAIGALKAAEFLVGKDPGMYSFEEVIF
General information:
TITO was launched using:
RESULT:
Template:
1VM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152188 for 1768 contacts (-86.1/contact) +
2D Compatibility (PS) -23348 + (NN) -11860 + (LL) 1948
1D Compatibility (HY) -14400 + (ID) 4000
Total energy: -203848.0 ( -115.30 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1VM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VM6-query.scw
PDB file :
Tito_Scwrl_1VM6.pdb
: