Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVIT-DLDKALSGLKDGDTILVGGFGLCGIPEYAIDYIYKKGIKDLIVVSNNCGVDDFGLGILLEKKQIKKIIASYVGENKIFESQMLNGEIEVVLTPQGTLAENLRAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYKSDTLGNLVFRKTARNFNPLCAMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEKTTTRSAK
3RRL Chain:A ((4-233))
-MNKVITDLDKALSALKDGDTILVGGFGLCGIPEYAIDYIYKKGIKDLIVVSNNCGVDDFGLGILLEKKQIKKIIASYVGENKIFESQMLNGEIEVVLTPQGTLAENLHAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYKSDTLGNLVFRKTARNFNPLCAMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEKITTRS--
General information:
TITO was launched using:
RESULT:
Template:
3RRL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138509 for 1893 contacts (-73.2/contact) +
2D Compatibility (PS) -24980 + (NN) -9868 + (LL) 416
1D Compatibility (HY) -32400 + (ID) 11050
Total energy: -216391.0 ( -114.31 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_3RRL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RRL-query.scw
PDB file :
Tito_Scwrl_3RRL.pdb
: