Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPVIRVLVMLATMMMKLVKTAKEKKVFKNVGISIMGIAFWEAIKDSIKKQIKKSDWICGNVKTADDYLKTHPNSWFNSAIGVTAITAMLMNVCFADDQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQFFIKKLGIKAGIAIEIEAECKTPKPTKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYRPSSIAYLELDPRDFNATEEWQKENLKIRSKAQAKMLEMRSLKPDPQAHLSTSQSLLLVQKIFADVSKEIKVVANTEKKVEKAGYGYSKRM |
| 1GD2 Chain:E ((5-69)) | ----------------------------------------------------------------------------------------------DQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GD2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 26698 for 252 contacts (105.9/contact) +
2D Compatibility (PS) -7701 + (NN) -6008 + (LL) 24528
1D Compatibility (HY) 400 + (ID) 650
Total energy: 37267.0 ( 147.88 by residue)
QMean score : 0.747
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