Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVFKRLEKLFSKIQNDKVYGVEHGVEVVKSL----ASAKFDETVEVALRLG-VDPRHADQMVRGAVVLLHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKN------GRIDFDMVIATPDMMAVVGK-VGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVNLDAQELMDIK
2NOQ Chain:G ((6-213))
-----------------------VREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQR-DKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSH--NDDLYGKVTDVRS-TIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKK--NWQNVGSLVVKSSMGPAFRL---------
General information:
TITO was launched using:
RESULT:
Template:
2NOQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76980 for 1489 contacts (-51.7/contact) +
2D Compatibility (PS) -20883 + (NN) -7992 + (LL) 3200
1D Compatibility (HY) -13200 + (ID) 2300
Total energy: -118155.0 ( -79.35 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_2NOQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NOQ-query.scw
PDB file :
Tito_Scwrl_2NOQ.pdb
: