Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTEMKSFLKLFAQPLLVVLAFMLLYALAHAVLGFYVKKDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKIIGSLIKNKSVKVLEIQN-----DWAEIEFSHETKGYVFLKLLKKAE |
1UG1 Chain:A ((34-75)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSLLEGDLVGVIKKKDPMGSQNRWLIDN-GVTKGFVYSSFLKPYN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1UG1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -15922 for 185 contacts (-86.1/contact) +
2D Compatibility (PS) -3686 + (NN) 4908 + (LL) 13084
1D Compatibility (HY) -2800 + (ID) 550
Total energy: -4966.0 ( -26.84 by residue)
QMean score : 0.491
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