Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSIRRGDGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHDNIFVD-----DKPTNLEALSAVVKQTDPK---TLIDLKSDKSSRFETFISIMDILKEHNHENFSISTQAQ
2JWK Chain:A ((19-92))
------------------------------------------------------GSVPVILEVAGIGKYAISIGGERQEGLTEEMVTQLSRQEFDKDNNTLFLVGGAKEVPYEEVIKALNLLHLAGIK---------
General information:
TITO was launched using:
RESULT:
Template:
2JWK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25795 for 425 contacts (-60.7/contact) +
2D Compatibility (PS) -7385 + (NN) -3852 + (LL) 4704
1D Compatibility (HY) -4800 + (ID) 550
Total energy: -37678.0 ( -88.65 by residue)
QMean score : 0.759
(partial model without unconserved sides chains):
PDB file :
Tito_2JWK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JWK-query.scw
PDB file :
Tito_Scwrl_2JWK.pdb
: