Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQSHQNLQSQFFIEHILQILPHRYPMLLVDRIIELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
3DP2 Chain:D ((8-159))
-------LQSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
General information:
TITO was launched using:
RESULT:
Template:
3DP2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114765 for 1162 contacts (-98.8/contact) +
2D Compatibility (PS) -15858 + (NN) -2406 + (LL) 488
1D Compatibility (HY) -24400 + (ID) 7500
Total energy: -164441.0 ( -141.52 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_3DP2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DP2-query.scw
PDB file :
Tito_Scwrl_3DP2.pdb
: