Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDQKIKDIYHIDDSFSIDNEKYNKWLKSLLNKTRGEITENDVYTMLLQQELEDLAIEKAIEFIKIDPLAGEMWDGQFLEQLAGISVDK--LVAYKEELQKLIPYMDNQINEILWDFETEKEEFLFRYAKFKDKVANL---
1JYO Chain:A ((1-130))
LQAHQDIIANIGEKLGLPLT-FDD------NNQCLLLLDSDIFTSIEAKD--DIWLLNGM-IIPLSPVCGDSIWRQIMVINGELAANNEGTLAYIDAAETLLLIHAITDLTNTYHIISQLESFVNQQEALKNILQEYAKV
General information:
TITO was launched using:
RESULT:
Template:
1JYO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11261 for 785 contacts (-14.3/contact) +
2D Compatibility (PS) -13139 + (NN) 1933 + (LL) 1168
1D Compatibility (HY) -7200 + (ID) 850
Total energy: -29349.0 ( -37.39 by residue)
QMean score : 0.198
(partial model without unconserved sides chains):
PDB file :
Tito_1JYO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JYO-query.scw
PDB file :
Tito_Scwrl_1JYO.pdb
: