Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDASTSFAILPSNVKQKTAFERKVNQVKAASWTNNCLTGTLDIG---QFSCYFVNEKIARVTVNPFGEVD-LTPSIAAIHDN-EKQAAKFTETNDCYELHFADKEVIVCKNPFQIIM-KQAGKRIFQTE-GLAIN----------RDKE-HQISIQSEPGTAIFGLGEKT-GALNKAGSIISMWNTDVYSPHNKDTVELYQSIPFMIADTAKTTYGLFYDNSHRTEFDFQSFE-E-------------------------------------------------------------------------------------------------------------------------------------------------------MYTVLAE-GGQANLYIIFGEDVKEVVANYTDLTGKTPLPPKWSLGYHQSRYSYTSEEEVERIANTFKEKEIPLDCVFMDIHYMD--DFRVFTFNPDTFPNGPELIARLREQNIDVVPIVDPGIKKDVDYSVYQEGIKNNYFCTKLEGSIYYGDVWPGV---SAFPDFLSTTVQHWWGSLHKF-YTDLGIRGIWNDMNEPSVFNESKTMDLDVVHNLDGKNVTHKEAHNLYGLYMSKATFEGLKRLVPNERPFSLTRAGYAGVQRYS-AVWTGDNRSHWEHLEMSLPMIMNLGLSGVAFTGADVGGFSSD-----------------------CTKEMLIRWTQAGAFLPYFRNHCVQDSIYQEPWAFGA---DAEKIVKQYIELRYAFLPYIYTEFQKTAESGLPLVRPLYMEFKDERDLIQVNDQFMLGENILVAPIVREGQAKRLVRLPKG-LWFNYWTKEQFVGGDYIIADAPIDTMPIYIKAGTILPVGSSVQNTKETQ--ELTLEVYLDSETATGYVYNDDGKSYQYESGAVSKTTLTATFKNGEVLINATH-QGEANLQQKVTTIQVFGEKIDKITRAGI |
| 2XVL Chain:A ((45-945)) | -------------------------ALAQVERTAEGVVLTLPEGTVKKLRLQVMGERIIRVTALPGTDFGIVPESIQVVAKPATNVPFSVDQAGEKLVLKTSQVSAEVSLLDGTVSFRDAKGNVLLQEENRGTFSPVIHDPDPVDADSYALRQEFNRGSDEGFFGLGQHQNGQVNYAGENVELTTY-----------NLVISIPFLVSSR-N--YGLLWDNNSITRFGDPREAQPLNQSLKLYDAEGKEGGLTVRYFVGDELKLTRVEADFNHQFYKQGNELENPFPEEVAGAYKNNTLRIELEGSIEAQATGKHQFKMYNSGYAQLSLDGEVVLDRWRMNWNPWYHNFYRELNAGDKHKLKVSWKPDGGFFHLRHLDPLPANEQHELSLASETGKAIDYYFVAGDTKDDIISGYRQLTGKSVMLPKWAYGFWQSRERYKSSDEIIQNLKEYRDRKIPIDNIVLDWSYWPEDAWGSHDFDKQFFPDPKALVDKVHAMNAQIMISVWPKFYP--TTDNYKELNAKGFMFNRNLDE--KNLDWIGKGYLNAFYDPFSPEATAIFWKQIRDKINVHGFDAWWLDAVEPDIHSNLT-FEKRKWLMTPNARGNGAEIFNAYAVPHAEGVYQGELATDGDKRSFILTRSGFGGIQRTGSAIWSGDIVSRWSDMKDQIAAGIGTNLAGVTNWTFDIGGFTPEDRFRHGKKGFVGSWTALDAEQVDEWQELNTRWYQFGAFVPLYRSHGQNP--YREIFNIADEGTEVYNAMVWYTKLRYYLMPYIYTLGGDTYHKDGTIMRGLVMDFPNDRKAWDINTQYMFGPAFLVNPVYEYKARSRDVYLPAGSDWYNFYTGEKLAGGQTITADAPLARVPLFVKAGAIVPTGPLIQHVDEGLNSPLLITVYTGA-NGSFDIYEDDGRSLKYQQGEWSRIPLSYD-DV-TGTLIIGDRVGSFTG---------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2XVL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -287941 for 6271 contacts (-45.9/contact) +
2D Compatibility (PS) -74586 + (NN) -29820 + (LL) 4984
1D Compatibility (HY) -35200 + (ID) 9000
Total energy: -431563.0 ( -68.82 by residue)
QMean score : 0.481
|
|
|