Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATTMRLDKYLKVSRLIKRRTVAKEVAEKGRIAVNGVTAKPGTNVKSGDELVIRFGPKIVTAKIERLEENAKKEQATEMYTIIKEERTDESR
1DM9 Chain:A ((9-55))
----VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATL-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1DM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7461 for 299 contacts (-25.0/contact) +
2D Compatibility (PS) -4993 + (NN) -1872 + (LL) 4284
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -14942.0 ( -49.97 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_1DM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DM9-query.scw
PDB file :
Tito_Scwrl_1DM9.pdb
: