Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLF-KWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
3HSD Chain:A ((3-134))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDALNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3HSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101350 for 967 contacts (-104.8/contact) +
2D Compatibility (PS) -13955 + (NN) -4863 + (LL) 2208
1D Compatibility (HY) -10000 + (ID) 2800
Total energy: -130760.0 ( -135.22 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_3HSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HSD-query.scw
PDB file :
Tito_Scwrl_3HSD.pdb
: