Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------------MNVF------EPRLSSWLENAGDDDD--VVLSSRIRLARNLKDE--QFPI-YEQKEEIVDNI--AEVFDD--------NFILIKMNQISLLQKALLVEKHLISPYMMNKSEYGAVLLNE----------EENVSIMLNEED---------HLRIQ-------CMTPGLRLFDALEAALQIDGYVEEKLSYA-FDKEFGYL---------TSCVTNIGTGMRASVMVHLPGLVTTKRI----------KSVIEAIRSLGFVVRGIYGEGSMPASNIFQVSNQVTLGKT------EAEIVEDLTQVMEQII--MQERVARTTLKQKFHIALEDRVFRSYGLLMNC----RIISMKEAADAIS--DIRFGVELGFFEHISRQKMNELVLFSQPAFLRREAGRDMDELE-EKVIRAKVIREIL-GDK |
| 2BMF Chain:A ((169-618)) | MASIEDNPEIEDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYIS-TRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTDISEMGANFKAERVID-PRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGEPLENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLMRRGDLPVWLAYRVAAEGINYADRRWCFD-GVKNNQILEENVEVEIWTKEGERKKLKPRWLDARIYSDPLALKEFKEFAAGRK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2BMF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -83023 for 2363 contacts (-35.1/contact) +
2D Compatibility (PS) -35914 + (NN) -5980 + (LL) 212
1D Compatibility (HY) -7200 + (ID) 3400
Total energy: -135305.0 ( -57.26 by residue)
QMean score : 0.310
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