Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIAKFFRNVSSEMHKVTWPTRKELLTYTVTVVITVVLFALFFMLIDFGIEQIIKLIV
1SPF Chain:A ((19-33))
------------------------------VVVLVVVVIVGALLM--------------
General information:
TITO was launched using:
RESULT:
Template:
1SPF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6909 for 50 contacts (-138.2/contact) +
2D Compatibility (PS) -1408 + (NN) 527 + (LL) 4440
1D Compatibility (HY) -4000 + (ID) 250
Total energy: -7600.0 ( -152.00 by residue)
QMean score : 0.937
(partial model without unconserved sides chains):
PDB file :
Tito_1SPF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SPF-query.scw
PDB file :
Tito_Scwrl_1SPF.pdb
: