Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVKNGKTKTIKRKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMVEKRAEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL
3LPE Chain:A ((9-90))
-AHMIFAVRTMVGQEKNIAGLMASRAEK--EQLDVYSILASES-----------------LKGYVLVEAETKGDVEELIKGMPRVRG---I-----VPGTIAIEEIEPLL-------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3LPE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46927 for 572 contacts (-82.0/contact) +
2D Compatibility (PS) -9017 + (NN) -4337 + (LL) 5776
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -59555.0 ( -104.12 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_3LPE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LPE-query.scw
PDB file :
Tito_Scwrl_3LPE.pdb
: