Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRKSRWLLILLLLIVLVALSACEDSGNGDISGAPAKMEKQHFPPTDTKKGWIELLATDGISSQDNLPCVYEEAESVEKLEVHMKELSTASLTYIYIDGHIVQMEQGGDELSFQIQLSKTELRKGIHELAVVQYQENNPETKKVEFLKRANYEVKQIKND
3BGA Chain:A ((143-195))
----------------------------------------------------------------------------RRVVLCCEGVISF--YYVWVNGKLLGYNQGSK-TAAEWDITD-VLSEGENVVAL-EVY-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3BGA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23841 for 293 contacts (-81.4/contact) +
2D Compatibility (PS) -5670 + (NN) 859 + (LL) 7148
1D Compatibility (HY) -5600 + (ID) 350
Total energy: -27454.0 ( -93.70 by residue)
QMean score : 0.236
(partial model without unconserved sides chains):
PDB file :
Tito_3BGA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BGA-query.scw
PDB file :
Tito_Scwrl_3BGA.pdb
: