Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKKRLLLASRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFI----LLLLFLSSIY-----PLKAWKVNRSFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPATFGKVRARQQVVYPLFKKQFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYF--PNVLEKISE---------ASPENERNAAYWTLKKNSNLH---SLREFSSGD-----RISLIDWKSSAKS--DQLMTREFENSATSRLSVI-FYGASHPNFELSLRAAYSFIRKISEENGEIRVTLLGDQTSKFAPAKGTSRLQDISTAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCMDTML-----MQKVTRLTDNKQLQIITFQSEHS-KAMDAPAIFLEQASLLSRWERETK---- |
| 4NOM Chain:A ((26-432)) | -----EDGGKHWVVIVAGSNG-WYNYRHQADACHAYQIIHRNGIPDEQIIVMMYDDIANSEENPTPGVVINRPNGTDVYK-GVLKD----YTGEDVTPENFLAVLRGDAEAVKG-KGSGKVLKSGPRDHVFIYFTDH-GATGILVFPNDDLHVKDLNKTIRYMYEHKMYQKMVFYIEACESGSMMNHLPDDINVYATTAANPKESSYACYYDEERGTYLGDWYSVNWMEDSDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKSISTMKVMQFQGMKHRASSPISLPPVTHLDL--TPSPDVPLTILKRKLLRTNDVKESQNLIGQIQQFLDARHVIEKSVHKIVSLLAGFGETAERHLS-ERTMLTAHDCYQEAVTHFRTHCFNWHSVTYEHALRYLYVLANLCEAPYPIDRIEMAMDKVCL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NOM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98661 for 3043 contacts (-32.4/contact) +
2D Compatibility (PS) -37746 + (NN) -508 + (LL) 1820
1D Compatibility (HY) -6000 + (ID) 3000
Total energy: -144095.0 ( -47.35 by residue)
QMean score : 0.163
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