Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQKEMLNFDYYNPTHIIFGKNRFNELNEVIPQ-DKKVLILYGGGSVERFGTLDKVKAA--LKSREVGEFGGIEANPTYETLIKAIQLVKEENYDFLLAVGGGSVIDGTKFVAAGALFDG-EPMDIFGSGIGEKRPITKALPFGTVLTLPATGSEMNSGGVITFVEKKAKLGFGSAYTYPVFSLLDPELTYTLPKRQLANGIMDAYVHVMEQYMTYPVGALLQDRYAESLLQTLIEIGPDVIKEDNHDYNTRATFMWSATNALNGTLSRGVPQDWASHSLGHEITALYGIDHARTLAIVLPSLLNVRRSEKHDKLVQYAERVWGITSGSDEEKIDAAILKTREFFESLGAGTRFSDYGLGEEVVDLLVDQLDRHGLTNISERGDQTLEVSRQIYTNAL |
| 1O2D Chain:A ((13-369)) | ------VWEFYMPTDVFFGEKILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDRE-----KVKHWLPVVEIPTTAGTGSEVTPYSILTDPEG-NKRGC--TLMFPVYAFLDPRYTYSMSDELTLSTGVDALSHAVEGYLSRK-STPPSDALAIEAMKIIHRNLPKAIEG---NREARKKMFVASCLAGMVIA---QTGTTLAHALGYPLTTEKGIKHGKATGMVLPFVMEVMKEEIPEKVDTVNHIF-G--------------GSLLKFLKELGLYEKV---AVSSEELEKWVEKGSRAK-HLKNTPGTFTPEKIRNIYREAL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1O2D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -213852 for 3304 contacts (-64.7/contact) +
2D Compatibility (PS) -37952 + (NN) -15322 + (LL) 2188
1D Compatibility (HY) -15600 + (ID) 4400
Total energy: -284938.0 ( -86.24 by residue)
QMean score : 0.502
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