Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLIPDNLLQPVVGKKQ-VEPKESLAEELVELPFISLLMENSPAPLIKGEADNEEQATIPLKE--IAPSLVSAKLLDSEPETKLPSAPLELKEVKETLAAIAKQAIDQPKIDSAPQVAQPPEMNTPK----EPTKNTTREQQPPPELIMPTKDSPKLAENVAKNQPALAKLPQEK-EAVQLFKASIKEPVTAKEEVAVKKPAESSNIWHDTTKQLTPAAKVEVPVTLKQLDK--TITDQIEQLQKFQVKQNKAFF--------AIQPESLG-KVEVLLKKMPDKIFVHIEYQEQTA---------KQKLEQMAQDLHN------------------RFRDRGV----EVAVTMTEKQAPKENGQGSEGRHHGESKKEKERENPH-------QEKAKQQVFDLEEET--- |
| 4NZR Chain:M ((26-416)) | ---NDGSYQSEIDLSGGANFREKFRNFANEL---SEAITNSPKGLDRPVPKTEISGLIKTGDNFITPS-FKAGYYDHVASDGSLLSYYQSTEYFNNRVLMPILQTTNGTLMANNRGYDDVFRQVPSFSGWSNTKATTVSTSNN-----LTYDKWTYF--AAKGSPLYDSYPNHFFEDVKTLAIDAKDISALKTTIDSEKP--TYLIIRGLSGNGSQLNELQLPESVKKVSLYGDYTGVNVAKQIFANVVELEFYSTSKANSFGFNPLVLGSKTNVIYDLFASKPFTHIDLTQVTLQNSDNSAIDANKLKQAVGDIYNYRRFERQFQGYFAGGYIDKYLVKNVNTNKDSDDDLVYRSLKELNLHLEEAYREGDNTYYRVNENYYPGASIYENERASRD-SEFQNEILKR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NZR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 202850 for 2404 contacts (84.4/contact) +
2D Compatibility (PS) -34145 + (NN) -5677 + (LL) 1976
1D Compatibility (HY) -5600 + (ID) 3300
Total energy: 156104.0 ( 64.94 by residue)
QMean score : 0.144
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