Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEKLDTVLGYLKEFPDYYKYVTKKTYTLNEKIIFEDEKAKSIFFIVEGYAAVEL-EDNLRKTNYISIFVLPYNVLGIDAFSSYPKKKHSITVMSESLMLYKIDADFLLNILSIKPDVNDFLLTSIADVFARHYALLGM-IAKTPKERIYMALENLAVEMGTEDEERNEIVLPNFINQSVLARYCRTTQPNISNLLTELVEEEFLINK-KSPYRIDKDSLDI
3E6C Chain:C ((28-224))
-----------------YTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFED--GSEKLLYYAGGNSLIGKLYPTG----NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAEMNTYNPTIRILRLFYELCSSQGKRVG--DTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGELKH
General information:
TITO was launched using:
RESULT:
Template:
3E6C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115549 for 1304 contacts (-88.6/contact) +
2D Compatibility (PS) -20647 + (NN) -2424 + (LL) 1496
1D Compatibility (HY) -5600 + (ID) 1300
Total energy: -144024.0 ( -110.45 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_3E6C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E6C-query.scw
PDB file :
Tito_Scwrl_3E6C.pdb
: