Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEGFAVIGLGRFGGSICRSLVEQGMEVLAIDSDEERVNEYMSIATHAVIANSTDENALRQLGIRNFEHVIVAIGEDIQSSILTTLILKEMGVKYVTAKATNDKHAKLLDKIGADRVVHPERDMGRRIAHYIVSKNMLDYLELSDEYSLVEISVSDPRFLGKSLVDLDFRNSFGVNIVGIKKDKQMIITPEANDVLHEGDILIVIGSDDDIERLQEKIQ
2HMV Chain:B ((9-141))
----FAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLSDENV----------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2HMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115121 for 1018 contacts (-113.1/contact) +
2D Compatibility (PS) -14535 + (NN) -3648 + (LL) 5672
1D Compatibility (HY) -13600 + (ID) 4100
Total energy: -145332.0 ( -142.76 by residue)
QMean score : 0.715
(partial model without unconserved sides chains):
PDB file :
Tito_2HMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HMV-query.scw
PDB file :
Tito_Scwrl_2HMV.pdb
: