Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKAILVVSFGTSYPETREKTIEACEKRVAHEFPDYTVFRAFTSNKIIKKLKTRDNMHINTPSQALNQLKELGYKEVIIQSLHIISGGEFEKITAQVEKFKPDFDSIIVSQPLLDSMEDYEKAIEAIRHQMPPLKEQEALILMGHGSKHHAFSAYACLDHMLLNE--PIYLCAVESYPGLDQVIERLQQADIKKAHLMPFMLVAGDHATNDMASDEENSWKSTLEQAGIQTECHLQGLGENPLIQSQFIDHIHTAIERVKTRG
1QGO Chain:A ((2-258))
-KKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTSGMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQSLHIINGDEYEKIVREVQLLRPLFTRLTLGVPLLSSHNDYVQLMQALRQQMPSLRQTEKVVFMGHGASHHAFAAYACLDHMMTAQRFPARVGAVESYPEVDILIDSLRDEGVTGVHLMPLMLVAGDHAINDMASDDGDSWKMRFNAAGIPATPWLSGLGENPAIRAMFVAHLHQALNM-----
General information:
TITO was launched using:
RESULT:
Template:
1QGO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -181640 for 2149 contacts (-84.5/contact) +
2D Compatibility (PS) -28051 + (NN) -12719 + (LL) 444
1D Compatibility (HY) -25600 + (ID) 6700
Total energy: -254266.0 ( -118.32 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_1QGO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QGO-query.scw
PDB file :
Tito_Scwrl_1QGO.pdb
: