Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTPDYKRVVLKLSGEALAGNDGFGINPSVVNLISAQIKEVVELGVEVAIVVGGGNIWRGKLGSEMGMDRAAADQMGMLATIMNSLSLQDSLENIGVATRVQTSIDMRQIAEPYIRRKAIRHLEKGRVVIFAGGTGNPYFSTDTAAALRAAEIEADVILMAKNNVDGVYNADPKLDENAKKYEELSYLDVIKEGLEVMDTTASSLSMDNDIPLIVFSFTEQGNNIKRVILGEKIGTTVRGKK
2V4Y Chain:C ((7-239))
---PVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKA-TKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPG-ALRRVVMGEKEGTLI----
General information:
TITO was launched using:
RESULT:
Template:
2V4Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172175 for 1956 contacts (-88.0/contact) +
2D Compatibility (PS) -25830 + (NN) -12634 + (LL) 224
1D Compatibility (HY) -24400 + (ID) 5500
Total energy: -240315.0 ( -122.86 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_2V4Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V4Y-query.scw
PDB file :
Tito_Scwrl_2V4Y.pdb
: