Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKSNTFLLITILVGLVFISFGCSEEKETPKKTAK---EVQGVQIKTKEFQRVVGW----LSKDSVLLQTKKSGVTYFEELNIYNEKKRPIFNTKESISEVQISPD--YRNILLYSAESAEKATMRIIALNDGSTVASRATKPLTTTFYWND---ESPEKIMFVTYSPEWNFQIENWDYTLDQ--------------------LDKIDVASPFISWYGDNLVISNNKDKPDDELGNLYLQDIRDSATKNLIVANIMQFAVHDNVLLTIEKNSD---EKLLYDF-RTLGFQNFFS--------------YNAAREYD--ELGTFVPYFDTNFDKNTFLTFVPYKSAKIGSGAKEYKLVKIDPTNKKESTILELMDNQPILSYETGDLVLYGYLFDKVIDTKTGKMYNLINTPTKSF------------- |
| 4C0H Chain:A ((19-445)) | --GDNEWHKLVIPKG-SDWQIDLKAEGKLIVKVNSGIVEIFGTELAVDDEYTFQNWKFPIYAVEETELLWKCPDLTTNTITVKPNHTMKYIYNLHFMLEKIRMSNFEGPRVVIVGGSQTRKTSLSRTLCSY---ALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLVDDVYKRSLQRTSIREYFYGSLDTALSPYAIGVDYEDLTIWKPSNVFDNEVGRVELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C0H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -42088 for 2553 contacts (-16.5/contact) +
2D Compatibility (PS) -38112 + (NN) -3825 + (LL) 172
1D Compatibility (HY) -3200 + (ID) 3150
Total energy: -90203.0 ( -35.33 by residue)
QMean score : 0.238
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